IL_8G31_139
3D structure
- PDB id
- 8G31 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8G31|1|v|A|532, 8G31|1|v|U|534, 8G31|1|v|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G31_139 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1381
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8G31|1|v|G|515
8G31|1|v|U|516
8G31|1|v|G|517
8G31|1|v|C|518
8G31|1|v|C|519
8G31|1|v|A|520
8G31|1|v|G|521
*
8G31|1|v|C|528
8G31|1|v|G|529
8G31|1|v|G|530
8G31|1|v|U|531
8G31|1|v|A|532
8G31|1|v|A|533
8G31|1|v|U|534
8G31|1|v|A|535
8G31|1|v|C|536
Current chains
- Chain v
- 16S
Nearby chains
- Chain c
- 30S ribosomal protein S4
- Chain k
- 30S ribosomal protein S12
- Chain x
- 30S ribosomal protein S3
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