3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAG*CGGACC
Length
10 nucleotides
Bulged bases
8G31|1|v|A|1257, 8G31|1|v|A|1280, 8G31|1|v|C|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G31_172 not in the Motif Atlas
Homologous match to IL_5J7L_055
Geometric discrepancy: 0.2014
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

8G31|1|v|G|1255
8G31|1|v|A|1256
8G31|1|v|A|1257
8G31|1|v|G|1258
*
8G31|1|v|C|1277
8G31|1|v|G|1278
8G31|1|v|G|1279
8G31|1|v|A|1280
8G31|1|v|C|1281
8G31|1|v|C|1282

Current chains

Chain v
16S

Nearby chains

Chain h
30S ribosomal protein S9
Chain i
30S ribosomal protein S10
Chain m
30S ribosomal protein S14
Chain u
Transcription termination/antitermination protein NusG
Chain x
30S ribosomal protein S3

Coloring options:


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