3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CGGGG*CAAG
Length
9 nucleotides
Bulged bases
8G61|1|S2|G|933
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_241 not in the Motif Atlas
Homologous match to IL_4V88_431
Geometric discrepancy: 0.1128
The information below is about IL_4V88_431
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

8G61|1|S2|C|931
8G61|1|S2|G|932
8G61|1|S2|G|933
8G61|1|S2|G|934
8G61|1|S2|G|935
*
8G61|1|S2|C|1007
8G61|1|S2|A|1008
8G61|1|S2|A|1009
8G61|1|S2|G|1010

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Lc
60S ribosomal protein L30
Chain SB
40S ribosomal protein S3a
Chain SN
40S ribosomal protein S13
Chain Sa
40S ribosomal protein S26

Coloring options:


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