3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
ACCA*UCCCU
Length
9 nucleotides
Bulged bases
8G61|1|S2|C|1215, 8G61|1|S2|C|1216
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_254 not in the Motif Atlas
Homologous match to IL_4V88_443
Geometric discrepancy: 0.1378
The information below is about IL_4V88_443
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.9
Basepair signature
cWW-cWS-cHS-L-cWW-tWH
Number of instances in this motif group
15

Unit IDs

8G61|1|S2|A|1214
8G61|1|S2|C|1215
8G61|1|S2|C|1216
8G61|1|S2|A|1217
*
8G61|1|S2|U|1681
8G61|1|S2|C|1682
8G61|1|S2|C|1683
8G61|1|S2|C|1684
8G61|1|S2|U|1685

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Pt
Transfer RNA; tRNA
Chain SF
40S ribosomal protein S5
Chain SQ
40S ribosomal protein S16
Chain Sc
40S ribosomal protein S28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2811 s