3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
GUAGU(A2M)(OMG)*CGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G61_303 not in the Motif Atlas
Homologous match to IL_8P9A_289
Geometric discrepancy: 0.0885
The information below is about IL_8P9A_289
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8G61|1|L5|G|2358
8G61|1|L5|U|2359
8G61|1|L5|A|2360
8G61|1|L5|G|2361
8G61|1|L5|U|2362
8G61|1|L5|A2M|2363
8G61|1|L5|OMG|2364
*
8G61|1|L5|C|3858
8G61|1|L5|G|3859
8G61|1|L5|A|3860
8G61|1|L5|A|3861
8G61|1|L5|A|3862
8G61|1|L5|C|3863

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LP
60S ribosomal protein L17

Coloring options:


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