IL_8HFR_038
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_038 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.1344
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8HFR|1|1e|G|991
8HFR|1|1e|A|992
8HFR|1|1e|G|993
8HFR|1|1e|G|994
8HFR|1|1e|U|995
8HFR|1|1e|A|996
8HFR|1|1e|A|997
*
8HFR|1|1e|U|1052
8HFR|1|1e|A|1053
8HFR|1|1e|A|1054
8HFR|1|1e|A|1055
8HFR|1|1e|U|1056
8HFR|1|1e|A|1057
8HFR|1|1e|U|1058
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 2f
- 5S ribosomal RNA; 5S rRNA
- Chain Ez
- 60S ribosomal protein L5
- Chain Gu
- 60S ribosomal protein L7-A
- Chain Tl
- 60S ribosomal protein L21-A
- Chain sm
- Translation machinery-associated protein 16
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