IL_8HFR_057
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_057 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.0728
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8HFR|1|1e|G|1444
8HFR|1|1e|U|1445
8HFR|1|1e|A|1446
8HFR|1|1e|G|1447
8HFR|1|1e|U|1448
8HFR|1|1e|A|1449
8HFR|1|1e|G|1450
*
8HFR|1|1e|C|2354
8HFR|1|1e|G|2355
8HFR|1|1e|A|2356
8HFR|1|1e|A|2357
8HFR|1|1e|A|2358
8HFR|1|1e|C|2359
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 3n
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DO
- 60S ribosomal protein L4-A
- Chain Pv
- 60S ribosomal protein L17-A
- Chain rA
- Nucleolar GTP-binding protein 1
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