IL_8HFR_058
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- 8HFR|1|1e|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_058 not in the Motif Atlas
- Homologous match to IL_5TBW_062
- Geometric discrepancy: 0.1042
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8HFR|1|1e|G|1500
8HFR|1|1e|U|1501
8HFR|1|1e|C|1502
8HFR|1|1e|A|1503
8HFR|1|1e|A|1504
8HFR|1|1e|C|1505
*
8HFR|1|1e|G|1513
8HFR|1|1e|G|1514
8HFR|1|1e|A|1515
8HFR|1|1e|C|1516
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain Pv
- 60S ribosomal protein L17-A
- Chain RP
- 60S ribosomal protein L19-A
- Chain li
- 60S ribosomal protein L39
- Chain rA
- Nucleolar GTP-binding protein 1
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