IL_8HFR_110
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8HFR_110 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0953
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8HFR|1|1e|C|3018
8HFR|1|1e|U|3019
8HFR|1|1e|U|3020
8HFR|1|1e|A|3021
8HFR|1|1e|G|3022
8HFR|1|1e|U|3023
8HFR|1|1e|A|3024
8HFR|1|1e|C|3025
*
8HFR|1|1e|G|3030
8HFR|1|1e|G|3031
8HFR|1|1e|A|3032
8HFR|1|1e|A|3033
8HFR|1|1e|C|3034
8HFR|1|1e|A|3035
8HFR|1|1e|G|3036
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L3
- Chain Ib
- 60S ribosomal protein L9-A
- Chain V5
- 60S ribosomal protein L23-A
- Chain rA
- Nucleolar GTP-binding protein 1
- Chain xd
- Ribosome biogenesis protein NSA2
- Chain yE
- Eukaryotic translation initiation factor 6
- Chain zp
- UPF0642 protein YBL028C
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