IL_8HFR_124

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8HFR|1|1e|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HFR_124 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.0832

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8HFR|1|1e|G|3328
8HFR|1|1e|U|3329
8HFR|1|1e|A|3330
*
8HFR|1|1e|U|3373
8HFR|1|1e|U|3374
8HFR|1|1e|A|3375
8HFR|1|1e|A|3376
8HFR|1|1e|G|3377
8HFR|1|1e|C|3378

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L3

Chain dG

60S ribosomal protein L31-A

Chain tB

Ribosome biogenesis protein RLP24