IL_8HL2_115

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAGAAG*UGGAC

Length

12 nucleotides

Bulged bases

8HL2|1|A23S|G|1355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_115 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.4055

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8HL2|1|A23S|G|1352
8HL2|1|A23S|U|1353
8HL2|1|A23S|A|1354
8HL2|1|A23S|G|1355
8HL2|1|A23S|A|1356
8HL2|1|A23S|A|1357
8HL2|1|A23S|G|1358
*
8HL2|1|A23S|U|1377
8HL2|1|A23S|G|1378
8HL2|1|A23S|G|1379
8HL2|1|A23S|A|1380
8HL2|1|A23S|C|1381

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L32E

50S ribosomal protein L32e

Chain L46A

Conserved protein