IL_8HL2_165

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUGAG*CUAAAAGAG

Length

14 nucleotides

Bulged bases

8HL2|1|A23S|G|2902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8HL2_165 not in the Motif Atlas

Homologous match to IL_4V9F_091

Geometric discrepancy: 0.4323

The information below is about IL_4V9F_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|U|2760
8HL2|1|A23S|U|2761
8HL2|1|A23S|G|2762
8HL2|1|A23S|A|2763
8HL2|1|A23S|G|2764
*
8HL2|1|A23S|C|2896
8HL2|1|A23S|U|2897
8HL2|1|A23S|A|2898
8HL2|1|A23S|A|2899
8HL2|1|A23S|A|2900
8HL2|1|A23S|A|2901
8HL2|1|A23S|G|2902
8HL2|1|A23S|A|2903
8HL2|1|A23S|G|2904

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L13P

50S ribosomal protein L13