IL_8I0P_008
3D structure
- PDB id
- 8I0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of human pre-Bact complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUGUCA*UCUGU
- Length
- 11 nucleotides
- Bulged bases
- 8I0P|1|G|U|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8I0P_008 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.3731
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.5
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8I0P|1|G|A|86
8I0P|1|G|U|87
8I0P|1|G|G|88
8I0P|1|G|U|89
8I0P|1|G|C|90
8I0P|1|G|A|91
*
8I0P|1|H|U|39
8I0P|1|H|C|40
8I0P|1|H|U|41
8I0P|1|H|G|42
8I0P|1|H|U|43
Current chains
- Chain G
- pre-mRNA
- Chain H
- U2 snRNA
Nearby chains
- Chain 1
- Splicing factor 3B subunit 1
- Chain 2
- Splicing factor 3B subunit 2
- Chain L
- Cell division cycle 5-like protein
- Chain v
- Splicing factor 3A subunit 2
- Chain w
- Splicing factor 3A subunit 3
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