IL_8I9P_053

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8I9P_053 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1083

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8I9P|1|C1|G|1426
8I9P|1|C1|U|1427
8I9P|1|C1|A|1428
8I9P|1|C1|G|1429
8I9P|1|C1|U|1430
8I9P|1|C1|A|1431
8I9P|1|C1|G|1432
*
8I9P|1|C1|C|2316
8I9P|1|C1|G|2317
8I9P|1|C1|A|2318
8I9P|1|C1|A|2319
8I9P|1|C1|A|2320
8I9P|1|C1|C|2321

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LP

60S ribosomal protein l17-like protein