IL_8IP8_054
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCCCAAC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_054 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1321
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|RB|U|1176
8IP8|1|RB|G|1177
8IP8|1|RB|C|1178
8IP8|1|RB|C|1179
8IP8|1|RB|C|1180
8IP8|1|RB|A|1181
8IP8|1|RB|A|1182
8IP8|1|RB|C|1183
*
8IP8|1|RB|G|1329
8IP8|1|RB|A|1330
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein uL30
- Chain FB
- 60S ribosomal protein uL13
- Chain MB
- 60S ribosomal protein eL33
- Chain YA
- 60S ribosomal protein eL20
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