IL_8IP8_060
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8IP8|1|RB|A|1225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_060 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2031
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8IP8|1|RB|U|1222
8IP8|1|RB|U|1223
8IP8|1|RB|A|1224
8IP8|1|RB|A|1225
8IP8|1|RB|G|1226
8IP8|1|RB|A|1227
8IP8|1|RB|C|1228
8IP8|1|RB|A|1229
8IP8|1|RB|G|1230
*
8IP8|1|RB|C|1287
8IP8|1|RB|C|1288
8IP8|1|RB|G|1289
8IP8|1|RB|A|1290
8IP8|1|RB|A|1291
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain JB
- 60S ribosomal protein eL40
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