IL_8IP8_102

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8IP8|1|RB|A|2805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_102 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.0959

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8IP8|1|RB|G|2405
8IP8|1|RB|A|2406
*
8IP8|1|RB|U|2804
8IP8|1|RB|A|2805
8IP8|1|RB|C|2806
8IP8|1|RB|C|2807

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DA

60S ribosomal protein uL2

Chain cl

Transfer RNA; tRNA