IL_8IP8_129
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_129 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.083
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8IP8|1|RB|C|3014
8IP8|1|RB|C|3015
8IP8|1|RB|U|3016
8IP8|1|RB|A|3017
8IP8|1|RB|G|3018
8IP8|1|RB|U|3019
8IP8|1|RB|A|3020
8IP8|1|RB|C|3021
*
8IP8|1|RB|G|3026
8IP8|1|RB|G|3027
8IP8|1|RB|A|3028
8IP8|1|RB|A|3029
8IP8|1|RB|C|3030
8IP8|1|RB|C|3031
8IP8|1|RB|G|3032
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DB
- 60S ribosomal protein uL3
- Chain FA
- 60S ribosomal protein uL6
- Chain GA
- 60S ribosomal protein uL14
- Chain JB
- 60S ribosomal protein eL40
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