IL_8IP8_131

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAUCG*CGAAG

Length

11 nucleotides

Bulged bases

8IP8|1|RB|A|3052, 8IP8|1|RB|C|3054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_131 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2334

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8IP8|1|RB|U|3050
8IP8|1|RB|C|3051
8IP8|1|RB|A|3052
8IP8|1|RB|U|3053
8IP8|1|RB|C|3054
8IP8|1|RB|G|3055
*
8IP8|1|RB|C|3080
8IP8|1|RB|G|3081
8IP8|1|RB|A|3082
8IP8|1|RB|A|3083
8IP8|1|RB|G|3084

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain OA

60S ribosomal protein eL24

Chain SA

60S ribosomal protein eL31