IL_8IP8_133

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8IP8|1|RB|A|3126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_133 not in the Motif Atlas

Homologous match to IL_8P9A_348

Geometric discrepancy: 0.1447

The information below is about IL_8P9A_348

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8IP8|1|RB|A|3099
8IP8|1|RB|U|3100
8IP8|1|RB|U|3101
8IP8|1|RB|A|3102
8IP8|1|RB|U|3103
*
8IP8|1|RB|A|3123
8IP8|1|RB|G|3124
8IP8|1|RB|A|3125
8IP8|1|RB|A|3126
8IP8|1|RB|U|3127

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain FA

60S ribosomal protein uL6

Chain FB

60S ribosomal protein uL13

Chain JB

60S ribosomal protein eL40