IL_8IP8_142

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCA*UCCAGU

Length

9 nucleotides

Bulged bases

8IP8|1|RB|G|3364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_142 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1421

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8IP8|1|RB|G|3315
8IP8|1|RB|C|3316
8IP8|1|RB|A|3317
*
8IP8|1|RB|U|3360
8IP8|1|RB|C|3361
8IP8|1|RB|C|3362
8IP8|1|RB|A|3363
8IP8|1|RB|G|3364
8IP8|1|RB|U|3365

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain OA

60S ribosomal protein eL24

Chain SA

60S ribosomal protein eL31