IL_8IP8_172

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

8IP8|1|aa|C|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_172 not in the Motif Atlas

Geometric match to IL_5J7L_276

Geometric discrepancy: 0.3936

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8IP8|1|aa|C|202
8IP8|1|aa|A|203
*
8IP8|1|aa|U|262
8IP8|1|aa|C|263
8IP8|1|aa|G|264

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ja

40S ribosomal protein eS4