IL_8IP8_177
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUCAA*UGGUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8IP8|1|aa|U|317, 8IP8|1|aa|U|355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_177 not in the Motif Atlas
- Homologous match to IL_8P9A_391
- Geometric discrepancy: 0.1328
- The information below is about IL_8P9A_391
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8IP8|1|aa|U|315
8IP8|1|aa|A|316
8IP8|1|aa|U|317
8IP8|1|aa|C|318
8IP8|1|aa|A|319
8IP8|1|aa|A|320
*
8IP8|1|aa|U|352
8IP8|1|aa|G|353
8IP8|1|aa|G|354
8IP8|1|aa|U|355
8IP8|1|aa|G|356
8IP8|1|aa|A|357
8IP8|1|aa|C|358
8IP8|1|aa|G|359
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain ca
- 40S ribosomal protein eS8
- Chain ga
- 40S ribosomal protein uS12
- Chain ib
- 40S ribosomal protein uS17
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