IL_8IP8_197

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCCG,CGGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_197 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3033

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8IP8|1|aa|G|647
8IP8|1|aa|C|648
8IP8|1|aa|C|649
8IP8|1|aa|G|650
*
8IP8|1|aa|C|701
8IP8|1|aa|G|702
8IP8|1|aa|G|703
8IP8|1|aa|C|704

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain hb

40S ribosomal protein eS7

Chain va

40S ribosomal protein uS8