IL_8IP8_205

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8IP8|1|aa|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_205 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2575

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8IP8|1|aa|G|872
8IP8|1|aa|G|873
8IP8|1|aa|A|874
8IP8|1|aa|C|875
*
8IP8|1|aa|G|962
8IP8|1|aa|U|963
8IP8|1|aa|U|964
8IP8|1|aa|U|965
8IP8|1|aa|U|966

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain pa

40S ribosomal protein uS15

Chain xa

40S ribosomal protein eS27