IL_8IP8_207

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8IP8|1|aa|G|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_207 not in the Motif Atlas

Homologous match to IL_8C3A_438

Geometric discrepancy: 0.0649

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8IP8|1|aa|C|879
8IP8|1|aa|G|880
8IP8|1|aa|G|881
8IP8|1|aa|G|882
8IP8|1|aa|G|883
*
8IP8|1|aa|C|955
8IP8|1|aa|A|956
8IP8|1|aa|A|957
8IP8|1|aa|G|958

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain RA

60S ribosomal protein eL30

Chain bb

40S ribosomal protein eS1

Chain db

40S ribosomal protein eS26

Chain pa

40S ribosomal protein uS15