IL_8IP8_217

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP8_217 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.0739

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8IP8|1|aa|G|1116
8IP8|1|aa|G|1117
8IP8|1|aa|A|1118
8IP8|1|aa|G|1119
8IP8|1|aa|U|1120
8IP8|1|aa|A|1121
8IP8|1|aa|U|1122
8IP8|1|aa|G|1123
*
8IP8|1|aa|U|1134
8IP8|1|aa|G|1135
8IP8|1|aa|A|1136
8IP8|1|aa|A|1137
8IP8|1|aa|A|1138
8IP8|1|aa|C|1139

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain IB

60S ribosomal protein eL41

Chain ga

40S ribosomal protein uS12