IL_8IP8_220
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8IP8|1|aa|C|1163, 8IP8|1|aa|C|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_220 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.1103
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8IP8|1|aa|A|1162
8IP8|1|aa|C|1163
8IP8|1|aa|C|1164
8IP8|1|aa|A|1165
*
8IP8|1|aa|U|1625
8IP8|1|aa|C|1626
8IP8|1|aa|C|1627
8IP8|1|aa|C|1628
8IP8|1|aa|U|1629
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain cl
- Transfer RNA; tRNA
- Chain ka
- 40S ribosomal protein uS7
- Chain la
- 40S ribosomal protein uS9
- Chain ma
- 40S ribosomal protein uS10
- Chain ua
- 40S ribosomal protein eS28
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