IL_8IP8_268
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUCAUG
- Length
- 16 nucleotides
- Bulged bases
- 8IP8|1|aa|C|1278, 8IP8|1|aa|U|1438, 8IP8|1|aa|C|1441
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8IP8_268 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1709
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|aa|U|1276
8IP8|1|aa|G|1277
8IP8|1|aa|C|1278
8IP8|1|aa|A|1279
8IP8|1|aa|U|1280
8IP8|1|aa|G|1281
8IP8|1|aa|G|1282
*
8IP8|1|aa|U|1436
8IP8|1|aa|C|1437
8IP8|1|aa|U|1438
8IP8|1|aa|G|1439
8IP8|1|aa|U|1440
8IP8|1|aa|C|1441
8IP8|1|aa|A|1442
8IP8|1|aa|U|1443
8IP8|1|aa|G|1444
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain al
- mRNA
- Chain bl
- eukaryotic release factor 1
- Chain da
- 40S ribosomal protein eS10
- Chain ia
- 40S ribosomal protein uS3
- Chain ma
- 40S ribosomal protein uS10
- Chain wa
- 40S ribosomal protein uS14
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