IL_8IP9_021

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUCAA*UGGUGACG

Length

14 nucleotides

Bulged bases

8IP9|1|aa|U|317, 8IP9|1|aa|U|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_021 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.1323

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8IP9|1|aa|U|315
8IP9|1|aa|A|316
8IP9|1|aa|U|317
8IP9|1|aa|C|318
8IP9|1|aa|A|319
8IP9|1|aa|A|320
*
8IP9|1|aa|U|352
8IP9|1|aa|G|353
8IP9|1|aa|G|354
8IP9|1|aa|U|355
8IP9|1|aa|G|356
8IP9|1|aa|A|357
8IP9|1|aa|C|358
8IP9|1|aa|G|359

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ga

40S ribosomal protein S23

Chain ib

40S ribosomal protein uS17