IL_8IP9_035

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8IP9|1|aa|A|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_035 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.1797

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8IP9|1|aa|G|566
8IP9|1|aa|U|567
8IP9|1|aa|G|568
8IP9|1|aa|C|569
8IP9|1|aa|C|570
8IP9|1|aa|A|571
8IP9|1|aa|G|572
*
8IP9|1|aa|C|579
8IP9|1|aa|G|580
8IP9|1|aa|G|581
8IP9|1|aa|U|582
8IP9|1|aa|A|583
8IP9|1|aa|A|584
8IP9|1|aa|U|585
8IP9|1|aa|U|586
8IP9|1|aa|C|587

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ga

40S ribosomal protein S23

Chain ia

40S ribosomal protein uS3

Chain ya

40S ribosomal protein eS30