IL_8IP9_049

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8IP9|1|aa|G|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_049 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.0802

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8IP9|1|aa|C|879
8IP9|1|aa|G|880
8IP9|1|aa|G|881
8IP9|1|aa|G|882
8IP9|1|aa|G|883
*
8IP9|1|aa|C|955
8IP9|1|aa|A|956
8IP9|1|aa|A|957
8IP9|1|aa|G|958

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain bb

40S ribosomal protein eS1

Chain db

40S ribosomal protein eS26

Chain pa

40S ribosomal protein uS15