IL_8IP9_052

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGCUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_052 not in the Motif Atlas

Homologous match to IL_8C3A_441

Geometric discrepancy: 0.1037

The information below is about IL_8C3A_441

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22198.1

Basepair signature

cWW-tSH-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8IP9|1|aa|G|990
8IP9|1|aa|G|991
8IP9|1|aa|G|992
8IP9|1|aa|C|993
8IP9|1|aa|U|994
8IP9|1|aa|C|995
*
8IP9|1|aa|G|1019
8IP9|1|aa|U|1020
8IP9|1|aa|C|1021

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain db

40S ribosomal protein eS26

Chain na

40S ribosomal protein uS11