IL_8IP9_053

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAG*CCUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IP9_053 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.0967

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8IP9|1|aa|C|995
8IP9|1|aa|G|996
8IP9|1|aa|A|997
8IP9|1|aa|A|998
8IP9|1|aa|G|999
*
8IP9|1|aa|C|1015
8IP9|1|aa|C|1016
8IP9|1|aa|U|1017
8IP9|1|aa|A|1018
8IP9|1|aa|G|1019

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain db

40S ribosomal protein eS26

Chain na

40S ribosomal protein uS11