IL_8IPX_036

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8IPX|1|2|G|748, 8IPX|1|2|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPX_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2039

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8IPX|1|2|G|745
8IPX|1|2|A|746
8IPX|1|2|A|747
8IPX|1|2|G|748
8IPX|1|2|G|749
8IPX|1|2|U|750
8IPX|1|2|G|751
8IPX|1|2|G|752
*
8IPX|1|2|U|911
8IPX|1|2|G|912
8IPX|1|2|U|913
8IPX|1|2|U|914
8IPX|1|2|A|915
8IPX|1|2|C|916
8IPX|1|2|A|917
8IPX|1|2|G|918
8IPX|1|2|C|919

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a

Chain r

Coiled-coil domain-containing protein 86