IL_8IPX_051

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8IPX_051 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3775

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8IPX|1|2|G|1425
8IPX|1|2|G|1426
8IPX|1|2|A|1427
8IPX|1|2|U|1428
8IPX|1|2|C|1429
*
8IPX|1|2|G|1455
8IPX|1|2|B8Q|1456
8IPX|1|2|G|1457
8IPX|1|2|C|1458
8IPX|1|2|A|1459
8IPX|1|2|C|1460

Current chains

Chain 2

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L18