IL_8JSG_017
3D structure
- PDB id
- 8JSG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S-IF3 complex from Escherichia coli
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8JSG|1|g|U|244, 8JSG|1|g|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JSG_017 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.2634
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8JSG|1|g|G|242
8JSG|1|g|A|243
8JSG|1|g|U|244
8JSG|1|g|U|245
8JSG|1|g|A|246
8JSG|1|g|G|247
*
8JSG|1|g|C|277
8JSG|1|g|G|278
8JSG|1|g|A|279
8JSG|1|g|C|280
8JSG|1|g|G|281
8JSG|1|g|A|282
8JSG|1|g|U|283
8JSG|1|g|C|284
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain P
- Small ribosomal subunit protein uS17
- Chain t
- Small ribosomal subunit protein uS12
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