IL_8JSG_047

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_047 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1746

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8JSG|1|g|G|887
8JSG|1|g|G|888
8JSG|1|g|A|889
8JSG|1|g|G|890
8JSG|1|g|U|891
8JSG|1|g|A|892
8JSG|1|g|C|893
8JSG|1|g|G|894
*
8JSG|1|g|U|905
8JSG|1|g|A|906
8JSG|1|g|A|907
8JSG|1|g|A|908
8JSG|1|g|A|909
8JSG|1|g|C|910

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain t

Small ribosomal subunit protein uS12