3D structure

PDB id
8JSG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 30S-IF3 complex from Escherichia coli
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8JSG_089 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.2292
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

8JSG|1|g|A|1430
8JSG|1|g|A|1431
8JSG|1|g|G|1432
8JSG|1|g|A|1433
8JSG|1|g|A|1434
8JSG|1|g|G|1435
*
8JSG|1|g|C|1466
8JSG|1|g|C|1467
8JSG|1|g|A|1468
8JSG|1|g|C|1469
8JSG|1|g|U|1470

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain 3
Small ribosomal subunit protein bS20

Coloring options:


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