IL_8JSG_089

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSG_089 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.2292

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8JSG|1|g|A|1430
8JSG|1|g|A|1431
8JSG|1|g|G|1432
8JSG|1|g|A|1433
8JSG|1|g|A|1434
8JSG|1|g|G|1435
*
8JSG|1|g|C|1466
8JSG|1|g|C|1467
8JSG|1|g|A|1468
8JSG|1|g|C|1469
8JSG|1|g|U|1470

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS20