IL_8K2B_017

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAG*CAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_017 not in the Motif Atlas

Geometric match to IL_2ZI0_001

Geometric discrepancy: 0.1847

The information below is about IL_2ZI0_001

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8K2B|1|L1|U|498
8K2B|1|L1|A|499
8K2B|1|L1|G|500
*
8K2B|1|L1|C|520
8K2B|1|L1|A|521
8K2B|1|L1|A|522

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L3

Large ribosomal subunit protein mL53

Chain L4

Large ribosomal subunit protein mL54

Chain LJ

Large ribosomal subunit protein uL10m

Chain LK

Large ribosomal subunit protein uL11m