IL_8K2B_018

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAG*CACC

Length

8 nucleotides

Bulged bases

8K2B|1|L1|A|502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_018 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3906

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8K2B|1|L1|G|500
8K2B|1|L1|U|501
8K2B|1|L1|A|502
8K2B|1|L1|G|503
*
8K2B|1|L1|C|517
8K2B|1|L1|A|518
8K2B|1|L1|C|519
8K2B|1|L1|C|520

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L4

Large ribosomal subunit protein mL54

Chain LK

Large ribosomal subunit protein uL11m

Chain LP

Large ribosomal subunit protein uL16m