IL_8K2B_051

3D structure

PDB id

8K2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2B_051 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.1925

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8K2B|1|L1|C|1449
8K2B|1|L1|C|1450
8K2B|1|L1|C|1451
8K2B|1|L1|U|1452
8K2B|1|L1|G|1453
8K2B|1|L1|U|1454
8K2B|1|L1|A|1455
8K2B|1|L1|C|1456
*
8K2B|1|L1|G|1461
8K2B|1|L1|G|1462
8K2B|1|L1|A|1463
8K2B|1|L1|C|1464
8K2B|1|L1|A|1465
8K2B|1|L1|A|1466
8K2B|1|L1|G|1467

Current chains

Chain L1

16s rRNA

Nearby chains

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1