IL_8K2D_020

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8K2D|1|C1|U|534, 8K2D|1|C1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1059

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8K2D|1|C1|G|531
8K2D|1|C1|A|532
8K2D|1|C1|A|533
8K2D|1|C1|U|534
8K2D|1|C1|G|535
8K2D|1|C1|U|536
8K2D|1|C1|A|537
8K2D|1|C1|G|538
*
8K2D|1|C1|U|553
8K2D|1|C1|A|554
8K2D|1|C1|U|555
8K2D|1|C1|U|556
8K2D|1|C1|A|557
8K2D|1|C1|U|558
8K2D|1|C1|A|559
8K2D|1|C1|G|560
8K2D|1|C1|C|561

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14A

Chain LS

Large ribosomal subunit protein eL20A