IL_8K2D_034

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

8K2D|1|C1|G|908, 8K2D|1|C1|A|920, 8K2D|1|C1|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_034 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.0679

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8K2D|1|C1|G|907
8K2D|1|C1|G|908
8K2D|1|C1|G|909
*
8K2D|1|C1|U|919
8K2D|1|C1|A|920
8K2D|1|C1|A|921
8K2D|1|C1|U|922
8K2D|1|C1|C|923

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LN

Large ribosomal subunit protein eL15A

Chain LP

Large ribosomal subunit protein uL22A

Chain Lj

Large ribosomal subunit protein eL37A