IL_8K2D_053
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C1|U|1191, 8K2D|1|C1|C|1192, 8K2D|1|C1|C|1316, 8K2D|1|C1|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_053 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.0928
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|C|1187
8K2D|1|C1|U|1188
8K2D|1|C1|C|1189
8K2D|1|C1|A|1190
8K2D|1|C1|U|1191
8K2D|1|C1|C|1192
8K2D|1|C1|A|1193
8K2D|1|C1|G|1194
*
8K2D|1|C1|C|1314
8K2D|1|C1|U|1315
8K2D|1|C1|C|1316
8K2D|1|C1|A|1317
8K2D|1|C1|A|1318
8K2D|1|C1|G|1319
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LH
- Large ribosomal subunit protein uL6A
- Chain LM
- Large ribosomal subunit protein eL14A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain Lm
- Ubiquitin-ribosomal protein eL40A fusion protein
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