IL_8K2D_056
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_056 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.1726
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8K2D|1|C1|U|1218
8K2D|1|C1|C|1219
8K2D|1|C1|U|1220
8K2D|1|C1|A|1221
8K2D|1|C1|G|1222
8K2D|1|C1|A|1223
8K2D|1|C1|C|1224
8K2D|1|C1|A|1225
8K2D|1|C1|G|1226
*
8K2D|1|C1|C|1283
8K2D|1|C1|C|1284
8K2D|1|C1|G|1285
8K2D|1|C1|A|1286
8K2D|1|C1|A|1287
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain Lm
- Ubiquitin-ribosomal protein eL40A fusion protein
- Chain P0
- Large ribosomal subunit protein uL10
Coloring options: