IL_8K2D_063

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_063 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0839

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8K2D|1|C1|G|1444
8K2D|1|C1|U|1445
8K2D|1|C1|A|1446
8K2D|1|C1|G|1447
8K2D|1|C1|U|1448
8K2D|1|C1|A|1449
8K2D|1|C1|G|1450
*
8K2D|1|C1|C|2354
8K2D|1|C1|G|2355
8K2D|1|C1|A|2356
8K2D|1|C1|A|2357
8K2D|1|C1|A|2358
8K2D|1|C1|C|2359

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4A

Chain LP

Large ribosomal subunit protein uL22A