IL_8K2D_069

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

8K2D|1|C1|U|1820, 8K2D|1|C1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_069 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.1658

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8K2D|1|C1|G|1623
8K2D|1|C1|G|1624
8K2D|1|C1|A|1625
*
8K2D|1|C1|U|1818
8K2D|1|C1|U|1819
8K2D|1|C1|U|1820
8K2D|1|C1|U|1821
8K2D|1|C1|C|1822

Current chains

Chain C1

23S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34A

Chain Lk

Large ribosomal subunit protein eL38