IL_8K2D_070
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUUC*GGAAUA
- Length
- 11 nucleotides
- Bulged bases
- 8K2D|1|C1|U|1629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2D_070 not in the Motif Atlas
- Homologous match to IL_8C3A_072
- Geometric discrepancy: 0.2766
- The information below is about IL_8C3A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48431.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|U|1627
8K2D|1|C1|C|1628
8K2D|1|C1|U|1629
8K2D|1|C1|U|1630
8K2D|1|C1|C|1631
*
8K2D|1|C1|G|1811
8K2D|1|C1|G|1812
8K2D|1|C1|A|1813
8K2D|1|C1|A|1814
8K2D|1|C1|U|1815
8K2D|1|C1|A|1816
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LZ
- Large ribosomal subunit protein eL27A
Coloring options: