IL_8K2D_071

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2D_071 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1159

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8K2D|1|C1|U|1645
8K2D|1|C1|G|1646
8K2D|1|C1|A|1647
8K2D|1|C1|A|1648
8K2D|1|C1|U|1649
*
8K2D|1|C1|A|1806
8K2D|1|C1|G|1807
8K2D|1|C1|G|1808
8K2D|1|C1|A|1809
8K2D|1|C1|A|1810

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LZ

Large ribosomal subunit protein eL27A

Chain Lg

Large ribosomal subunit protein eL34A